99 on PP Facing a Minraise on Raggedy Flop

He min-raised me right away, should I have put in a third raise to say $10 and shut down if he calls?

***** Hand History for Game 3808343989 *****
$25 NL Texas Hold'em - Friday, March 24, 00:09:51 ET 2006
Table Table 96325 (Real Money)
Seat 2 is the button
Total number of players : 6
Seat 1: Becel111 ( $13.40 )
Seat 4: jsmity12 ( $52.05 )
Seat 5: marks9999 ( $4.24 )
Seat 6: aisle5 ( $24.65 )
Seat 2: mlsfitz ( $18.06 )
Seat 3: mexigan ( $8.85 )
mexigan posts small blind [$0.10].
jsmity12 posts big blind [$0.25].
** Dealing down cards **
Dealt to aisle5 [ 9s 9h ]
marks9999 folds.
aisle5 raises [$1].
Becel111 folds.
mlsfitz calls [$1].
mexigan folds.
jsmity12 folds.
** Dealing Flop ** [ 3c, 6d, 5h ]
aisle5 bets [$1.50].
mlsfitz raises [$3].
aisle5 calls [$1.50].
** Dealing Turn ** [ Ad ]
aisle5 checks.
mlsfitz bets [$2].
aisle5 calls [$2].
** Dealing River ** [ 6h ]
aisle5 checks.
mlsfitz checks.
aisle5 shows [ 9s, 9h ] two pairs, nines and sixes.
mlsfitz shows [ Ac, Jh ] two pairs, aces and sixes.
mlsfitz wins $11.75 from the main pot with two pairs, aces and sixes.

raise more on flop. your raise is worthless.

edit: sorry for stupid reply. i probably 3 bet the flop assuming im playing with donks.

He bet the flop, villain minraised

You played it fine. You got a cheap showdown and that is what you wanted. He made a EV- raise, and just got lucky by hitting the turn. The river pairing the board's TP allowed you a cheap showdown. Maybe a little Karma saving you a tough river decision.